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抛砖引玉, 简单计算NSW的病例/病死率/疫苗相关性

2021-10-10 13:27| 发布者: xiva | 查看: 1714| 原文链接


proxies = {
  'http': 'xxxxx',
  'https': 'xxxxx'
}
import requests
import pandas as pd
from scipy.stats import linregress
import matplotlib.pyplot as plt
from sklearn.preprocessing import MinMaxScaler
import numpy as np

urls = ['https://covidlive.com.au/report/daily-cases/nsw',
        'https://covidlive.com.au/report/daily-deaths/nsw',
       'https://covidlive.com.au/report/daily-vaccinations/nsw']

T = 13
T2 = 42
d = pd.DataFrame()
for url in urls:
    html = requests.get(url,proxies=proxies).content
    tab_list = pd.read_html(html)
    data = tab_list[1]
    data.set_index("DATE", inplace=True)
    d = pd.concat([d, data], axis=1)

d.index = pd.to_datetime(d.index)
data = d[['DEATHS','DOSES','CASES','NEW']]
data = data.dropna()
data = data.assign(DAILYDEATH = data["DEATHS"] - data["DEATHS"].shift(-1),
                  CASE_T = data["NEW"].shift(-1*T),
                  CASELOG = data["NEW"]/data["NEW"].shift(-1),
                  DEATHLOG = data["DEATHS"]/data["DEATHS"].shift(-1),
                  DOSE_T = data["DOSES"].shift(-1*T2))
data = data.dropna()
data.fillna(0, inplace=True)
data["CASELOG"] = data["CASELOG"].apply(np.log)
data["DEATHLOG"] = data["DEATHLOG"].apply(np.log)
data['CFR'] = data.DAILYDEATH/data.CASE_T
data = data.sort_index()
data = data.loc["2021-07-01":]
#[['NEW','DAILYDEATH','CASE_T','INCREASELOG','DOSE_T','CFR']]
standardizer = MinMaxScaler().fit(data)
data = pd.DataFrame(data, columns=['DEATHS', 'DOSES', 'CASES', 'NEW', 'DAILYDEATH', 'CASE_T',
       'CASELOG', 'DEATHLOG', 'DOSE_T', 'CFR'])


data[["CFR", "DOSE_T"]].corr()

        CFR        DOSE_T
CFR        1.000000        -0.108629
DOSE_T        -0.108629        1.000000
#完全疫苗率上升,死亡率下降

data[["CASELOG", "DOSE_T"]].corr()
CASELOG        DOSE_T
CASELOG        1.000000        -0.197275
DOSE_T        -0.197275        1.000000
#完全疫苗率上升,病例扩散速度下降

data[["CASELOG", "CFR"]].corr()
CASELOG        CFR
CASELOG        1.000000        0.091137
CFR        0.091137        1.000000

#病例扩散速度增加,死亡增加
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